The day-to-day operation of the University is managed by the Office of the President and the Senior Executive Cabinet (SEC):
- Dr. Lady June Cole – Interim President
- Mrs. Paige Moore – Vice President of Human Resources, Administration, and Community Outreach
- Ms. Cynthia Eubanks – Interim Vice President of Student Affairs
- Mr. William Robinson – Director of Title III
- Mrs. Brenda Walker - Vice President of Fiscal Affairs
- Dr. Flavia Eldemire – Interim Director of Institutional Advancement
- Ms. Geraldine Livingston – Administrative Assistant to the President
The governance of policy and general administration of Allen University is a function of the University’s Board of Trustees. Board members are as follows:
- The Right Reverend Dr. Richard Franklin Norris, Chairman
- Mr. Alfred R. Berkeley, III
- Rev. Dr. Ronnie E. Brailsford, Sr.
- The Honorable James E. Clyburn
- Rev. Robert B. Cooper, Sr.
- The Honorable Tamara C. Curry
- Mr. Norman L. Deas
- Rev. John H. Gillison
- Rev. Dr. Juenarrl Keith
- Mr. Willie F. Johnson
- Rev. Robert L. McCants, Sr.
- Rev. Dr. Norvel Goff, Sr.
- Rev. William Smith, Jr.
- Mr. Fred Sheheen
- Mr. Sy Holt
- Ms. Bobra Bright McAdams
- Mrs. Judy Davis